Table 2.

Public TRB CDR3 clones among tumor tissues of all 16 patients

Clone_CDR3Sample numberV geneJ geneID (%)
CSARSPGYEQYF3TRBV20-1TRBJ2-7BC0002A(0.0035)BC0007A(0.0163)BC0012A(0.0196)
CAISESTQAYEQYF3TRBV10-3TRBJ2-7BC0005A(0.0044)BC0007A(0.0229)BC0009A(0.0200)
CASSLGQSSYGYTF3TRBV5-1TRBJ1-2BC0002A(0.0038)BC0004A(0.0101)BC0011A(0.0243)
CATSRDSGGLGTTDTQYF3TRBV15TRBJ2-3BC0002A(0.0006)BC0005A(1.0582)BC0006A(0.0107)
CSVDAGGGGNTIYF2TRBV29-1TRBJ1-3BC0012A(0.0291)BC0013A(0.0481)
CSARVGLAGADTQYF2TRBV20-1TRBJ2-3BC0005A(0.0134)BC0014A(0.0116)
CASSGTGGSSNQPQHF2TRBV6-3 TRBV6-2TRBJ1-5BC0001A(0.0166)BC0009A(0.0524)
CSVAGTSGRNTGELFF2TRBV29-1TRBJ2-2BC0013A(0.0160)BC0015A(0.1018)
CSAREIGGGGQPQHF2TRBV20-1TRBJ1-5BC0003A(0.0204)BC0008A(0.0135)
CSASPGLAGRETQYF2TRBV20-1TRBJ2-5BC0004A(0.0131)BC0013A(0.0102)
CSVEEAYEQYF2TRBV29-1TRBJ2-7BC0005A(0.0453)BC0007A(0.0135)
CSANFRERNSPLHF2TRBV20-1TRBJ1-6BC0005A(0.8711)BC0006A(0.0107)
CASSLFQGPSYEQYF2TRBV7-8TRBJ2-7BC0001A(0.0188)BC0010A(0.0837)
CSASQTDTQYF2TRBV20-1TRBJ2-3BC0002A(0.0278)BC0008A(0.0358)
CASSFAASKHYEQYF2TRBV12-4 TRBV12-3TRBJ2-7BC0016A(0.0152)BC0008A(0.0352)
CSASRRDGTDTQYF2TRBV20-1TRBJ2-3BC0015A(0.0171)BC0008A(0.0149)
CATSLAGGETQYF2TRBV24/OR9-2 TRBV24-1TRBJ2-5BC0011A(0.0100)BC0015A(0.1671)
CATSDINEQFF2TRBV24/OR9-2 TRBV24-1TRBJ2-1BC0002A(0.0123)BC0010A(0.0211)
CAWSPSGGLPQYF2TRBV30TRBJ2-3BC0005A(0.4246)BC0006A(0.0113)
CATSRENNEQFF2TRBV15TRBJ2-1BC0003A(0.0113)BC0005A(0.0115)
CSAPGQGSGNTIYF2TRBV20-1TRBJ1-3BC0001A(0.0108)BC0013A(0.0109)
CASSLVGRGDYGYTF2TRBV7-2TRBJ1-2BC0003A(0.0141)
TRBV5-1TRBJ1-2BC0004A(0.0177)
CASSATGTGANSPLHF2TRBV5-1TRBJ1-6BC0001A(0.0147)
TRBV2TRBJ1-6BC0003A(0.1580)
CASTTNTDTQYF2TRBV12-4 TRBV12-3TRBJ2-3BC0010A(0.0182)
TRBV19TRBJ2-3BC0009A(0.0301)
  • Note: All these clones were filtered with a TRB database of 661 healthy individuals.