Table 1

HNSCC clones corresponding to known genes.

Functional Group Clone ID No. of Times Isolated Identity Unigene Cluster Previously Identified by SEREX
DNA binding/ Transcription AU-HN-2 1 TREX1, 3' repair exonuclease Hs.278408 no
AU-HN-4 2 BRAP (BRCA1 associated): Nuclear localization protein Hs.122764 yes
AU-HN-5 1 Trim 26 zinc finger domains Hs.1287 no
AU-HN-10 1 GTF21 transcription factor. Murine homolog TF11-1 Hs.278589 no
AU-HN-11 6 NSEP1 (YB-1) transcription factor Hs.74497 yes
AU-HN-16 1 MAZ transcription factor associated with c-myc Hs.7647 yes
AU-HN-17 1 SON (DBP-5; KIAA1019; NREBP DNA binding protein) Hs.92909 yes
AU-HN-27 1 NACA nascent polypeptide-associated complex Hs.32916 yes
AU-HN-37 1 NUBP2 nucleotide binding protein Hs.256549 no
RNA processing/ Translation AU-HN-3 1 EEF2 Translation elongation factor 2 Hs.75309 no
AU-HN-13 2 GU2 Putative RNA helicase Hs.7392 no
AU-HN-30 1 RPLI3A ribosomal protein Hs.119122 no
AU-HN-31 1 SFRS21P (CASP11; SIP1; SRRP1290 splicing factor) Hs.51957 no
AU-HN-33 1 RPS12 ribosomal protein Hs.339696 no
AU-HN-34 1 MGC2835 RNA helicase Hs.70582 no
Regulatory AU-HN-18 1 TMF1, TATA modulatory factor Hs.267632 yes
AU-HN-23 1 PRC1 regulator of cytokinesis Hs.344037 no
Structural AU-HN-22 2 KRT14 keratin 14 Hs.355214 no
AU-HN-28 1 Viniculin Hs.75350 yes
AU-HN-32 1 H2AFY histone family member Hs.75258 no
Apoptosis repressor AU-HN-14 2 SLK (KIAA02304) Ste related kinase Hs.105751 no
AU-HN-20 2 NOL3 (ARC) nuclear protein 3, apoptosis repressor Hs.278439 no
Molecular chaperone AU-HN-24 1 DNAJA2 member of Hsp40 family Hs.21189 yes
AU-HN-35 1 DNAJA1 member of HSP40 family Hs.94 yes
Other AU-HN-1 1 LINE-1 retrotransposon No yes
AU-HN-6 1 MOG (HSPC 165) Homolog of yeast protein Hs.13605 no
AU-HN-12 4 LIMS1 (PINCH): LIM and senescent antigen-like domain Hs.112378, Hs.193700 yes
AU-HN-21 2 COPB2 coatomer protein complex subunit protein Hs.75724 no
AU-HN-25 1 FLJ22548 hypothetical protein Hs.103267 no
AU-HN-26 2 C21orf97; FLJ21324; MGC15873 Hs.4746 yes
AU-HN-29 3 SSNA1 Sjogrens syndrome nuclear autoantigen 1 Hs.18528 no