Table 1

Summary of all datasets used to build SurfaceomeDB.

SourceLink for Site
NCBI Gene Entrez http://www.ncbi.nlm.nih.gov/gene/
CTD http://ctd.mdibl.org/
Gene Ontology (GO) http://www.geneontology.org/
Pathway (KEGG) http://www.genome.jp/kegg/
TMHMM http://www.cbs.dtu.dk/
InterPro http://www.ebi.ac.uk/interpro/
Pfam http://pfam.sanger.ac.uk/
PDB http://www.pdb.org/
ModBase http://modbase.compbio.ucsf.edu/
SAGE Genie http://cgap.nci.nih.gov/SAGE/
MPSS http://mpss.licr.org/
NCBI-GEO http://www.ncbi.nlm.nih.gov/geo/
SRA (Sequence Read Archive) http://trace.ncbi.nlm.nih.gov/sra/
qPCRda Cunha et al. 2009
Protein-Protein InteractionCancherini et al. 2010
Somatic MutationsCOSMIC and a local database
RefSeq http://www.ncbi.nlm.nih.gov/RefSeq/